Gómez-Schiavon, M.*, & El-samad, H.* (2022). CoRa –A general approach for quantifying biological feedback control. PNAS 119(36):e2206825119.
doi: 10.1073/pnas.2206825119 (bioRxiv preprint. doi: 10.1101/2020.10.09.334078)
* Co-corresponding author
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Nguyen, T. H., Dods, G., Gómez-Schiavon, M., Wu, M., Chen, Z., Kibler, R., Baker, D., El-Samad, H., Ng, A. H. (2022). Competitive displacement of de novo designed heterodimers can reversibly control protein-protein interactions and implement feedback in synthetic circuits. GEN Biotechnology 1, no. 1 (February 2022): 91–100.
doi: 10.1089/genbio.2021.0011
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Gómez-Schiavon, M.*, Dods, G.*, El-Samad, H., & Ng, A. (2020). Multidimensional characterization of parts enhances modeling accuracy in genetic circuits. ACS Synthetic Biology 9, no. 11 (November 20, 2020): 2917–26.
* Co-first author
doi: 10.1021/acssynbio.0c00288 (bioRxiv preprint. doi: 10.1101/2020.05.30.122077)

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Gómez-Schiavon, M.*, & Buchler, N. E. (2019). Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise. PLoS Computational Biology 15(10): e1007364.
* Corresponding author
doi: 10.1371/journal.pcbi.1007364 (bioRxiv preprint. doi: 10.1101/072199)
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Chevalier, M.*, Gómez-Schiavon, M.*, Ng, A., & El-Samad, H. (2019). Design and analysis of a Proportional-Integral-Derivative controller with biological molecules. Cell Systems, 9, 338–353.
* Co-first author
doi: 10.1016/j.cels.2019.08.010 (bioRxiv preprint. doi: 10.1101/303545)
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Ng, A.H., Nguyen, T.H., Gómez-Schiavon, M., Dods, G., Langan, R.A., Boyken, S.E., Samson, J.A., Waldburger, L.M., Dueber, J.E., Baker, D., & El-Samad, H. (2019). Modular and tunable biological feedback control using a de novo protein switch. Nature, 1476-4687.
doi: 10.1038/s41586-019-1425-7
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Chen, L.-F., Lin, Y.T. , Gallegos, D.A., Hazlett, M.F., Gómez-Schiavon, M., Yang, M.G., Kalmeta, B., Zhou, A.S., Holtzman, L., Gersbach, C.A., Grandl, J., Buchler, N.E., & West, A. E. (2019). Enhancer histone acetylation modulates transcriptional bursting dynamics of neuronal activity-inducible genes. Cell Reports, 1174–1188.
doi: 10.1016/j.celrep.2019.01.032

Gómez-Schiavon, M., & El-Samad, H. (2018). Complexity-Aware Simple Modeling. Current Opinion in Microbiology, 45, 47–52.
doi: 10.1016/j.mib.2018.01.004 (bioRxiv preprint. doi: 10.1101/248419)

Gómez-Schiavon, M., Chen, L.-F., West, A. E., & Buchler, N. E. (2017). BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells. Genome Biology, 18:164.
doi: 10.1186/s13059-017-1297-9 (bioRxiv preprint. doi: 10.1101/109603)
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