{"id":11,"date":"2021-01-29T17:52:35","date_gmt":"2021-01-29T17:52:35","guid":{"rendered":"http:\/\/mgschiavon.org\/?page_id=11"},"modified":"2026-01-13T17:40:02","modified_gmt":"2026-01-13T23:40:02","slug":"publications","status":"publish","type":"page","link":"https:\/\/mgschiavon.org\/?page_id=11","title":{"rendered":"Publications"},"content":{"rendered":"\n

Hern\u00e1ndez\u2011Garc\u00eda, M.E., G\u00f3mez\u2011Schiavon, M.<\/strong>, & Vel\u00e1zquez\u2011Castro, J. (2025). Stability analysis under intrinsic fluctuations: a second\u2011moment perspective of gene regulatory networks. Physical Biology, 22<\/strong> 066001<\/em>. doi:10.1088\/1478-3975\/ae0b22<\/a>
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Hern\u00e1ndez\u2011Garc\u00eda, M.E.<\/strong>, G\u00f3mez\u2011Schiavon, M.<\/strong>, & Vel\u00e1zquez\u2011Castro, J. (2024<\/strong>). Extrinsic Fluctuations in the p53 Cycle. The Journal of Chemical Physics 161, no. 18 (November 8, 2024): 184103<\/em>.
doi: <\/small>10.1063\/5.0227728<\/a>(aRxiv preprint. <\/em>doi: <\/small><\/small>10.48550\/arXiv.2408.12107<\/a>)
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G\u00f3mez-Schiavon, M.*<\/strong>, Montejano-Montelongo, I.<\/strong>, Orozco-Ruiz, F.S.<\/strong> & Sotomayor-Vivas, C.<\/em><\/strong> (2024<\/strong>). The art of modeling gene regulatory circuits. npj Syst Biol Appl<\/em> 10<\/strong>, 60.
doi: <\/small>10.1038\/s41540-024-00380-2<\/a>
* Corresponding author<\/small>
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G\u00f3mez-Schiavon, M.*<\/strong>, & El-samad, H.* (2022<\/strong>). CoRa \u2013A general approach for quantifying biological feedback control. PNAS 119(36):e2206825119<\/em>.
doi: 10.1073\/pnas.2206825119<\/a> <\/em>(bioRxiv preprint. <\/em>doi: <\/small>10.1101\/2020.10.09.334078<\/a><\/small>)
* Co-corresponding author<\/small>
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Nguyen, T. H., Dods, G., G\u00f3mez-Schiavon, M.<\/strong>, Wu, M., Chen, Z., Kibler, R., Baker, D., El-Samad, H., Ng, A. H. (2022<\/strong>). Competitive displacement of de novo designed heterodimers can reversibly control protein-protein interactions and implement feedback in synthetic circuits. GEN Biotechnology 1, no. 1 (February 2022): 91\u2013100.<\/em>
doi: 10.1089\/genbio.2021.0011<\/a><\/small>
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G\u00f3mez-Schiavon, M.*<\/strong>, Dods, G.*, El-Samad, H., & Ng, A. (2020<\/strong>). Multidimensional characterization of parts enhances modeling accuracy in genetic circuits. ACS Synthetic Biology 9, no. 11 (November 20, 2020): 2917\u201326<\/em>.
* Co-first author
doi: 10.1021\/acssynbio.0c00288<\/a> <\/em>(bioRxiv preprint. <\/em>doi: 10.1101\/2020.05.30.122077<\/a>)<\/small>
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G\u00f3mez-Schiavon, M.*<\/strong>, & Buchler, N. E. (2019<\/strong>). Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise. PLoS Computational Biology 15(10): e1007364<\/em>.
* Corresponding author<\/small>
doi: 10.1371\/journal.pcbi.1007364<\/a> (bioRxiv preprint. <\/em>doi: 10.1101\/072199<\/a>)<\/small>
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Chevalier, M.*, G\u00f3mez-Schiavon, M.*<\/strong>, Ng, A., & El-Samad, H. (2019<\/strong>). Design and analysis of a Proportional-Integral-Derivative controller with biological molecules. Cell Systems, 9, 338\u2013353.<\/em>
* Co-first author<\/small>
doi: 10.1016\/j.cels.2019.08.010<\/a> (bioRxiv preprint.<\/em> doi: 10.1101\/303545<\/a>)<\/small>
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Ng, A.H., Nguyen, T.H., G\u00f3mez-Schiavon, M.<\/strong>, Dods, G., Langan, R.A., Boyken, S.E., Samson, J.A., Waldburger, L.M., Dueber, J.E., Baker, D., & El-Samad, H. (2019<\/strong>). Modular and tunable biological feedback control using a de novo protein switch. Nature<\/em>, 1476-4687.
doi: 10.1038\/s41586-019-1425-7<\/a><\/small>
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Chen, L.-F., Lin, Y.T. , Gallegos, D.A., Hazlett, M.F., G\u00f3mez-Schiavon, M.<\/strong>, Yang, M.G., Kalmeta, B., Zhou, A.S., Holtzman, L., Gersbach, C.A., Grandl, J., Buchler, N.E., & West, A. E. (2019<\/strong>). Enhancer histone acetylation modulates transcriptional bursting dynamics of neuronal activity-inducible genes. Cell Reports<\/em>, 1174\u20131188.
doi: 10.1016\/j.celrep.2019.01.032<\/a><\/small>
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G\u00f3mez-Schiavon, M.<\/strong>, & El-Samad, H. (2018<\/strong>). Complexity-Aware Simple Modeling. Current Opinion in Microbiology<\/em>, 45, 47\u201352.
doi: 10.1016\/j.mib.2018.01.004<\/a> (bioRxiv preprint<\/em>. doi: 10.1101\/248419<\/a>)<\/small>
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G\u00f3mez-Schiavon, M.<\/strong>, Chen, L.-F., West, A. E., & Buchler, N. E. (2017<\/strong>). BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells. Genome Biology<\/em>, 18:164.
doi: 10.1186\/s13059-017-1297-9<\/a> (bioRxiv preprint<\/em>. doi: 10.1101\/109603<\/a>)<\/small>
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Theses<\/h2>\n\n\n\n

van Haastrecht, B.<\/strong> (2024<\/strong>) A MAPK Pathway Model to Investigate the Origins of Acral Lentiginous Melanoma<\/a>. Thesis, MSc Bioinformatics and Systems Biology, Vrije Universiteit Amsterdam<\/em>.<\/p>\n\n\n\n

S\u00e1nchez-Escalante, E.<\/strong> (2024<\/strong>) Aplicaci\u00f3n de Control Ratio: B\u00fasqueda de comportamientos representativos en motivos de control<\/a>. Tesis de Licenciatura en Ciencias Gen\u00f3micas, CCG, UNAM<\/em>.<\/p>\n\n\n\n

Tamayo-Luisce, A.<\/strong> (2024<\/strong>) CoRaDyn \u2014 Una aproximaci\u00f3n general para cuantificar el control por retroalimentaci\u00f3n de sistemas biol\u00f3gicos que considera la din\u00e1mica de su respuesta a una perturbaci\u00f3n<\/a>. Tesis de Licenciatura en Ciencias Gen\u00f3micas, ENES Juriquilla, UNAM<\/em>.<\/p>\n\n\n\n

Hern\u00e1ndez-S\u00e1nchez, E.<\/strong> (2024<\/strong>) Evolutionary dynamic of a model of the Neurospora crassa<\/em> circadian clock<\/a>. Tesis de Licenciatura en Ciencias Gen\u00f3micas, CCG, UNAM<\/em>.<\/p>\n\n\n\n

Orozco-Ru\u00edz, F.S.<\/strong> (2022<\/strong>) Din\u00e1micas de Expresi\u00f3n y Evolutivas de un Circuito de Regulaci\u00f3n G\u00e9nica con Retroalimentaci\u00f3n Positiva y Negativa<\/a>. Tesis de Licenciatura en Ciencias Gen\u00f3micas, ENES Juriquilla, UNAM<\/em>.<\/p>\n\n\n\n

G\u00f3mez-Schiavon, M.<\/strong> (2016<\/strong>) Stochastic Dynamics and Epigenetic Regulation of Gene Expression: from Stimulus Response to Evolutionary Adaptation<\/a>. PhD thesis, Duke University<\/em>.<\/p>\n\n\n\n

G\u00f3mez-Schiavon, M. (2009)<\/strong> Modelo del circuito de regulaci\u00f3n del oper\u00f3n de triptofanasa en Escherichia coli<\/a>. Tesis de Maestr\u00eda en Ciencias en Ingenier\u00eda y F\u00edsica Biom\u00e9dicas, CINVESTAV Unidad Monterrey<\/em>.<\/p>\n","protected":false},"excerpt":{"rendered":"

Hern\u00e1ndez\u2011Garc\u00eda, M.E., G\u00f3mez\u2011Schiavon, M., & Vel\u00e1zquez\u2011Castro, J. (2025). Stability analysis under intrinsic fluctuations: a second\u2011moment perspective of gene regulatory networks. Physical Biology, 22 066001. doi:10.1088\/1478-3975\/ae0b22PDF Hern\u00e1ndez\u2011Garc\u00eda, M.E., G\u00f3mez\u2011Schiavon, M., & Vel\u00e1zquez\u2011Castro, J. (2024). Extrinsic Fluctuations in the p53 Cycle. The Journal of Chemical Physics 161, no. 18 (November 8, 2024): 184103.doi: 10.1063\/5.0227728(aRxiv preprint. doi: 10.48550\/arXiv.2408.12107)PDF… Read More »Publications<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"neve_meta_sidebar":"","neve_meta_container":"","neve_meta_enable_content_width":"","neve_meta_content_width":0,"neve_meta_title_alignment":"","neve_meta_author_avatar":"","neve_post_elements_order":"","neve_meta_disable_header":"","neve_meta_disable_footer":"","neve_meta_disable_title":"","footnotes":""},"class_list":["post-11","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/pages\/11","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/mgschiavon.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=11"}],"version-history":[{"count":30,"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/pages\/11\/revisions"}],"predecessor-version":[{"id":758,"href":"https:\/\/mgschiavon.org\/index.php?rest_route=\/wp\/v2\/pages\/11\/revisions\/758"}],"wp:attachment":[{"href":"https:\/\/mgschiavon.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=11"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}